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Dear all,</div>
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Please ignore the early draft email. My wireless keyboard just runs out of battery...<br>
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1) <br>
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I have installed multiple extra python modules including MySQLdb, mysql, mysql_connector_python, PyFoam, openseespy, etc. on the Stampede2 system under /home1/apps/DesignSafe.
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The only exception is PyLncore, which is another story. If Jamie needs any extra assistance with that, I am glad to help.</div>
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2) To use the new installed packages, please add one single command before you start python like this:<br>
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<span style="color:rgb(118,62,155)">$ export PYTHONPATH=$PYTHONPATH:/home1/apps/DesignSafe/</span></div>
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Or you can use the "sys.path" to update it within your Python environment like this:<br>
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$ python3
<div>Python 3.6.8 (default, Apr 2 2020, 13:34:55) </div>
<div>[GCC 4.8.5 20150623 (Red Hat 4.8.5-39)] on linux</div>
<div>Type "help", "copyright", "credits" or "license" for more information.</div>
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<div>>>> import mysql</div>
<div>Traceback (most recent call last):</div>
<div> File "<stdin>", line 1, in <module></div>
<div>ModuleNotFoundError: No module named 'mysql'</div>
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<div>>>><span style="color:rgb(118,62,155)"> import sys</span></div>
<div>>>> <span style="color:rgb(118,62,155)">sys.path.append('/home1/apps/DesignSafe')</span></div>
<div>>>> import mysql</div>
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<div>3) You can list (and grep) the installed packages on the system with the commands like:<br>
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<span style="color: rgb(118, 62, 155);"></span><span style="color: rgb(118, 62, 155);">
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<span style="color:rgb(118,62,155)">$ export PYTHONPATH=$PYTHONPATH:/home1/apps/DesignSafe/</span></div>
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</span><span style="color: rgb(118, 62, 155);">$ pip3 freeze | grep mysql</span><br>
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If you encounter any problems or need any further assistance, please feel free to let me know.<br>
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Best wishes,</div>
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Si Liu</div>
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TACC<br>
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<span style="color:#1F497D"> </span></p>
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<b>From:</b> Usecase <usecase-bounces@designsafe-ci.org> <b>On Behalf Of </b>Natalie Henriques<br>
<b>Sent:</b> Tuesday, November 24, 2020 10:16 AM<br>
<b>To:</b> usecase@designsafe-ci.org<br>
<b>Subject:</b> [Usecase] Action Required: Python Modules</p>
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<span style="font-size:12.0pt">Hi All,</span></p>
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<span style="font-size:12.0pt"> </span></p>
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<span style="font-size:12.0pt">Si Liu and his team will be working to get extra Python modules on the system by December 18, 2020.
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<span style="font-size:12.0pt"> </span></p>
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<span style="font-size:12.0pt">Please let him know w<span style="color:black">hat extra Python modules you need or will need on TACC systems (like openseespy, paramiko, scipy, etc.)
</span>by <b>Monday, December 7</b> so that he will have time to review them.</span></p>
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Thanks,</p>
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Natalie </p>
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<span style="font-size:9.0pt; font-family:"Arial",sans-serif; color:black">Natalie Henriques, PMP</span><span style="color:black"></span></p>
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<span style="font-size:9.0pt; font-family:"Arial",sans-serif; color:black">DesignSafe Project Manager<br>
Texas Advanced Computing Center (TACC)<br>
The University of Texas at Austin<br>
Email: </span><a href="UrlBlockedError.aspx" target="_blank"><span style="font-size:9.0pt; font-family:"Arial",sans-serif; color:blue">natalie@tacc.utexas.edu</span></a><span style="color:black"></span></p>
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