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Dear all,</div>
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1) <br>
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I have installed multiple extra python modules including MySQLdb, mysql, mysql_connector_python, PyFoam, openseespy, etc. on the Stampede2 system under /home1/apps/DesignSafe/pyincore.
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The only exception is PyLncore, which is another story. If Jamie needs any extra assistance with that, I am glad to help.</div>
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2) To use the new installed packages,</div>
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please add one single command before you start python:<br>
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<span style="color: rgb(118, 62, 155);">export PYTHONPATH=/home1/apps/DesignSafe/$PYTHONPATH</span></div>
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<br>
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Or you can use the "sys.path" to update it within your Python environment like this:<br>
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python3
<div>Python 3.6.8 (default, Apr 2 2020, 13:34:55) </div>
<div>[GCC 4.8.5 20150623 (Red Hat 4.8.5-39)] on linux</div>
<div>Type "help", "copyright", "credits" or "license" for more information.</div>
<div>>>> import mysql</div>
<div>Traceback (most recent call last):</div>
<div> File "<stdin>", line 1, in <module></div>
<div>ModuleNotFoundError: No module named 'mysql'</div>
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<div>>>><span style="color: rgb(118, 62, 155);"> import sys</span></div>
<div>>>> <span style="color: rgb(118, 62, 155);">sys.path.append('/home1/apps/DesignSafe')</span></div>
<div>>>> import mysql</div>
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<div>3) You can list the installed packages on the system with the command <br>
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<div id="divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" face="Calibri, sans-serif" color="#000000"><b>From:</b> Usecase <usecase-bounces@designsafe-ci.org> on behalf of Jamie Padgett <jp7@rice.edu><br>
<b>Sent:</b> Tuesday, November 24, 2020 11:38 AM<br>
<b>To:</b> Natalie Henriques <natalie@tacc.utexas.edu>; usecase@designsafe-ci.org <usecase@designsafe-ci.org><br>
<b>Subject:</b> Re: [Usecase] Action Required: Python Modules</font>
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<span style="color:#1F497D">Is it possible to get PyIncore?</span></p>
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<span style="color:#1F497D"><a href="https://incore.ncsa.illinois.edu/doc/incore/pyincore.html">https://incore.ncsa.illinois.edu/doc/incore/pyincore.html</a>
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<span style="color:#1F497D">This could promote some good collaboration with NIST COE.</span></p>
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<span style="color:#1F497D"><br>
Jamie</span></p>
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<span style="color:#1F497D">--------------------------------------------------------</span></p>
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<span style="color:#1F497D">Jamie Ellen Padgett, PhD</span></p>
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<span style="color:#1F497D">Stanley C. Moore Professor</span></p>
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<span style="color:#1F497D">Dept. of Civil & Environmental Engineering</span></p>
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<span style="color:#1F497D">Rice University</span></p>
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<span style="color:#1F497D">6100 Main St., MS-318</span></p>
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<span style="color:#1F497D">Houston, TX 77005</span></p>
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<span style="color:#1F497D">Phone: 713-348-2325; Fax: 713-348-5268</span></p>
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<span style="color:#1F497D">Email: <a href="mailto:jamie.padgett@rice.edu"><span style="color:blue">jamie.padgett@rice.edu</span></a></span></p>
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<span style="color:#1F497D">Office: 214 Ryon Lab</span></p>
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<span style="color:#1F497D">Website: <a href="https://padgett.rice.edu/"><span style="color:blue">https://padgett.rice.edu/</span></a>
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<span style="color:#1F497D"> </span></p>
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<b>From:</b> Usecase <usecase-bounces@designsafe-ci.org> <b>On Behalf Of </b>Natalie Henriques<br>
<b>Sent:</b> Tuesday, November 24, 2020 10:16 AM<br>
<b>To:</b> usecase@designsafe-ci.org<br>
<b>Subject:</b> [Usecase] Action Required: Python Modules</p>
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<span style="font-size:12.0pt">Hi All,</span></p>
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<span style="font-size:12.0pt"> </span></p>
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<span style="font-size:12.0pt">Si Liu and his team will be working to get extra Python modules on the system by December 18, 2020.
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<span style="font-size:12.0pt"> </span></p>
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<span style="font-size:12.0pt">Please let him know w<span style="color:black">hat extra Python modules you need or will need on TACC systems (like openseespy, paramiko, scipy, etc.)
</span>by <b>Monday, December 7</b> so that he will have time to review them.</span></p>
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Thanks,</p>
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Natalie </p>
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<span style="font-size:9.0pt; font-family:"Arial",sans-serif; color:black">Natalie Henriques, PMP</span><span style="color:black"></span></p>
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<span style="font-size:9.0pt; font-family:"Arial",sans-serif; color:black">DesignSafe Project Manager<br>
Texas Advanced Computing Center (TACC)<br>
The University of Texas at Austin<br>
Email: </span><a href="UrlBlockedError.aspx" target="_blank"><span style="font-size:9.0pt; font-family:"Arial",sans-serif; color:blue">natalie@tacc.utexas.edu</span></a><span style="color:black"></span></p>
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