[Usecase] Action Required: Python Modules (Update status)

[Si Liu]

Dear all,

1)
I have installed multiple extra python modules including MySQLdb, mysql, mysql_connector_python, PyFoam, openseespy, etc. on the Stampede2 system under /home1/apps/DesignSafe/pyincore.

The only exception is PyLncore, which is another story. If Jamie needs any extra assistance with that, I am glad to help.

2) To use the new installed packages,
please add one single command before you start python:
export PYTHONPATH=/home1/apps/DesignSafe/$PYTHONPATH

Or you can use the "sys.path" to update it within your Python environment like this:

python3
Python 3.6.8 (default, Apr  2 2020, 13:34:55)
[GCC 4.8.5 20150623 (Red Hat 4.8.5-39)] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import mysql
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
ModuleNotFoundError: No module named 'mysql'

>>> import sys
>>> sys.path.append('/home1/apps/DesignSafe')
>>> import mysql

3) You can list the installed packages on the system with the command



________________________________
From: Usecase <usecase-bounces at designsafe-ci.org> on behalf of Jamie Padgett <jp7 at rice.edu>
Sent: Tuesday, November 24, 2020 11:38 AM
To: Natalie Henriques <natalie at tacc.utexas.edu>; usecase at designsafe-ci.org <usecase at designsafe-ci.org>
Subject: Re: [Usecase] Action Required: Python Modules


Is it possible to get PyIncore?

https://incore.ncsa.illinois.edu/doc/incore/pyincore.html

This could promote some good collaboration with NIST COE.

Jamie

--------------------------------------------------------

Jamie Ellen Padgett, PhD

Stanley C. Moore Professor

Dept. of Civil & Environmental Engineering

Rice University

6100 Main St., MS-318

Houston, TX 77005

Phone: 713-348-2325;  Fax: 713-348-5268

Email: jamie.padgett at rice.edu<mailto:jamie.padgett at rice.edu>

Office: 214 Ryon Lab

Website: https://padgett.rice.edu/



From: Usecase <usecase-bounces at designsafe-ci.org> On Behalf Of Natalie Henriques
Sent: Tuesday, November 24, 2020 10:16 AM
To: usecase at designsafe-ci.org
Subject: [Usecase] Action Required: Python Modules



Hi All,



Si Liu and his team will be working to get extra Python modules on the system by December 18, 2020.



Please let him know what extra Python modules you need or will need on TACC systems (like openseespy, paramiko, scipy, etc.) by Monday, December 7 so that he will have time to review them.



Thanks,

Natalie



Natalie Henriques, PMP

DesignSafe Project Manager
Texas Advanced Computing Center (TACC)
The University of Texas at Austin
Email: natalie at tacc.utexas.edu<UrlBlockedError.aspx>


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.designsafe-ci.org/pipermail/usecase/attachments/20201207/bd83de35/attachment.html>